Official UK procurement notice
High Throughput Sequencer · UK public procurement notice
Authority: London School of Hygiene & Tropical Medicine (Education)
What is being bought
Published requirement descriptionThe MRC Unit the Gambia at LSHTM intends to purchase an Illumina Novaseq 6000 sequencing system including delivery (to the Gambia), installation, validation and training. The high throughput sequencer is capable of sequencing very large genomes. Also included is Illumina Dragen Server and Licence.
CPV: Laboratory, optical and precision equipments (excl. glasses) · Medical equipments
The lotProcurement structure
single lot · no lot value publishedLot #1High Throughput DNA Sequencer - Illumina Novaseq 6000 system and Dragen Server Software
High Throughput DNA Sequencer - Illumina Novaseq 6000 system and Dragen Server Software.
System specifications
Output range: 80-6000Gb
Paired end reads per run: 1.6B - 40B
Maximum read length: 2 x 250bp
Run time: 13 – 44 hours
Flow cell type: SP, S1, S2, S4
Reads passing filter per flow cell: Single-end reads upto 8-10B and paired-end reads 16-20B
Quality scores: between 75 to greater than 90% bases higher than Q30
Instrument Specifications
Instrument configuration
Computer and touch screen display
Installation setup and accessories
Data collection and analysis software
Instrument control computer
Base unit: Portwell WADE-8022 with Intel i7 4700EQ CPU
Memory: 2 x 8 GB DDR3L SODIMM
Hard Drive: None
Solid-State Drive: 256GB mSATA
Operating system: Windows 10 or higher
Laser
Wavelengths: 532nm, 660nm, 780nm, 790nm
Power requirements
200-240 VAC 50/60Hz, 16A, single phase, 2500 W
Network connection
Dedicated 1 Gb connection between the instrument and data management system.
Bandwidth for network connection
200 Mb/s/instrument for internal network uploads
200 Mb/s/instrument for cloud base uploads
5Mb/s/instrument for instrument operational Data uploads
Procedure terms & legal framework
From the official record- Procedure method
- Award procedure without prior publication of a call for competition
- Legal basis
- CELEX · 32014L0024 Public Contracts Regulations 2015 (Directive 2014/24/EU)
- Procurement category
- Goods
- Notice status
- Awarded without competition
- Procurement threshold
- Unspecified in notice
- Regulatory regime
- Standard
- Commercial structure
- Stand-alone contract (no framework)
- Competition type
- Direct award (no call for competition)
- GPA / WTO covered
- Yes (GPA)
- Recurring procurement
- Unspecified in notice
- First published
- 28 Feb 2023, 11:24 GMT
- Last source update
- 28 Feb 2023, 11:24 GMT
- Authority reference
LSHTM-2023-18- FTS notice number
2023/S 000-005792- Classification (CPV)
- Delivery area
- Official registry OCID
ocds-h6vhtk-03acb2Find a Tender
- Why no open competition
- The procurement falls outside the scope of application of the directive
- Published justification
LSHTM believes that the technical requirements of the high throughput next generation sequencing platform can only be met by one known supplier. There are no other competing systems on the market with anything approaching this capacity.
The instrument performs whole genome sequencing efficiently and cost effectively. In addition to whole genome sequencing, it can be used for a variety of other applications including but not limited to methylation sequencing, population studies, De novo sequencing, gene expression profiling, metagenomics etc.
The instrument has a scalable throughput for dynamic study sizes with an output range of 6TB to 20B reads in less than 2 days. It is able to sequence deeply for clear answers to research questions.
The flexibility of the instrument allows users to mix and match flow cell types as well as choose between multiple read lengths, workflows and many more. The different DRAGEN pipelines are able to analyse generated data within a very short period of time thereby helping with the data analysis bottleneck and lack of bioinformaticians.
The NovaSeq 6000 System combines unmatched system output with rapid run times to deliver the highest daily throughput of any NGS system currently available.
ISN Products (Nig.) Ltd are the approved distributor for Illumina products in the region (Gambia).
- Review procedure
Any review must be notified to the contracting authority in accordance with VEAT timescales
Commercial outcome & contract awards
Published awards, contracts and bid statistics, not a forecast| Awarded to | Value | Date | Status |
|---|---|---|---|
| ISN Products (Nig.) LtdSME | US$917,617 † | — | Awarded |
Contracts
Contract 005792-2023-1 · ISN Products (Nig.) LtdSME
- Signed
- 28 Feb 2023
- Value
- US$917,617
- Status
- active
Contracting authority & participating public bodies
Dispute resolution & review bodies
- The Royal Courts of JusticeReview body
Bidders & participating suppliers
1 commercial party on the notice- ISN Products (Nig.) LtdAwarded supplier
Official documents & specifications
Official links; attachments are not copiedNo document links were published on the notice.