High Throughput Sequencer

{
  "id": "005792-2023",
  "tag": [
    "award",
    "contract"
  ],
  "date": "2023-02-28T11:24:24Z",
  "ocid": "ocds-h6vhtk-03acb2",
  "buyer": {
    "id": "GB-FTS-33357",
    "name": "London School of Hygiene & Tropical Medicine"
  },
  "awards": [
    {
      "id": "005792-2023-1",
      "status": "active",
      "suppliers": [
        {
          "id": "GB-FTS-76291",
          "name": "ISN Products (Nig.) Ltd"
        }
      ],
      "relatedLots": [
        "1"
      ]
    }
  ],
  "tender": {
    "id": "LSHTM-2023-18",
    "lots": [
      {
        "id": "1",
        "hasOptions": false,
        "description": "High Throughput DNA Sequencer - Illumina Novaseq 6000 system and Dragen Server Software.\nSystem specifications\nOutput range: 80-6000Gb\nPaired end reads per run: 1.6B - 40B\nMaximum read length: 2 x 250bp\nRun time: 13 – 44 hours\nFlow cell type: SP, S1, S2, S4\nReads passing filter per flow cell: Single-end reads upto 8-10B and paired-end reads 16-20B\nQuality scores: between 75 to greater than 90% bases higher than Q30\nInstrument Specifications\nInstrument configuration\nComputer and touch screen display\nInstallation setup and accessories\nData collection and analysis software\nInstrument control computer\nBase unit: Portwell WADE-8022 with Intel i7 4700EQ CPU\nMemory: 2 x 8 GB DDR3L SODIMM\nHard Drive: None\nSolid-State Drive: 256GB mSATA\nOperating system: Windows 10 or higher\nLaser\nWavelengths: 532nm, 660nm, 780nm, 790nm\nPower requirements\n200-240 VAC 50/60Hz, 16A, single phase, 2500 W\nNetwork connection\nDedicated 1 Gb connection between the instrument and data management system.\nBandwidth for network connection\n200 Mb/s/instrument for internal network uploads\n200 Mb/s/instrument for cloud base uploads\n5Mb/s/instrument for instrument operational Data uploads"
      }
    ],
    "items": [
      {
        "id": "1",
        "relatedLot": "1",
        "deliveryLocation": {
          "description": "Alantic Boulevard, Fajara, Banjul, The Gambia"
        },
        "deliveryAddresses": [
          {
            "region": "GM"
          }
        ],
        "additionalClassifications": [
          {
            "id": "33100000",
            "scheme": "CPV",
            "description": "Medical equipments"
          }
        ]
      }
    ],
    "title": "High Throughput Sequencer",
    "status": "complete",
    "coveredBy": [
      "GPA"
    ],
    "legalBasis": {
      "id": "32014L0024",
      "scheme": "CELEX"
    },
    "description": "The MRC Unit the Gambia at LSHTM intends to purchase an Illumina Novaseq 6000 sequencing system including delivery (to the Gambia), installation, validation and training. The high throughput sequencer is capable of sequencing very large genomes. Also included is Illumina Dragen Server and Licence.",
    "reviewDetails": "Any review must be notified to the contracting authority in accordance with VEAT timescales",
    "classification": {
      "id": "38000000",
      "scheme": "CPV",
      "description": "Laboratory, optical and precision equipments (excl. glasses)"
    },
    "procurementMethod": "limited",
    "mainProcurementCategory": "goods",
    "procurementMethodDetails": "Award procedure without prior publication of a call for competition",
    "procurementMethodRationale": "LSHTM believes that the technical requirements of the high throughput next generation sequencing platform can only be met by one known supplier. There are no other competing systems on the market with anything approaching this capacity.\nThe instrument performs whole genome sequencing efficiently and cost effectively. In addition to whole genome sequencing, it can be used for a variety of other applications including but not limited to methylation sequencing, population studies, De novo sequencing, gene expression profiling, metagenomics etc.\nThe instrument has a scalable throughput for dynamic study sizes with an output range of 6TB to 20B reads in less than 2 days. It is able to sequence deeply for clear answers to research questions.\nThe flexibility of the instrument allows users to mix and match flow cell types as well as choose between multiple read lengths, workflows and many more. The different DRAGEN pipelines are able to analyse generated data within a very short period of time thereby helping with the data analysis bottleneck and lack of bioinformaticians.\nThe NovaSeq 6000 System combines unmatched system output with rapid run times to deliver the highest daily throughput of any NGS system currently available.\nISN  Products (Nig.) Ltd are the approved distributor for Illumina products in the region (Gambia).",
    "procurementMethodRationaleClassifications": [
      {
        "id": "D_OUTSIDE_SCOPE",
        "scheme": "TED_PT_AWARD_CONTRACT_WITHOUT_CALL",
        "description": "The procurement falls outside the scope of application of the directive"
      }
    ]
  },
  "parties": [
    {
      "id": "GB-FTS-33357",
      "name": "London School of Hygiene & Tropical Medicine",
      "roles": [
        "buyer"
      ],
      "address": {
        "region": "UKI31",
        "locality": "London",
        "postalCode": "WC1E 7HT",
        "countryName": "United Kingdom",
        "streetAddress": "Keppel Street,"
      },
      "details": {
        "url": "http://www.lshtm.ac.uk",
        "classifications": [
          {
            "id": "BODY_PUBLIC",
            "scheme": "TED_CA_TYPE",
            "description": "Body governed by public law"
          },
          {
            "id": "07",
            "scheme": "COFOG",
            "description": "Health"
          }
        ]
      },
      "identifier": {
        "id": "RC000330",
        "legalName": "London School of Hygiene & Tropical Medicine"
      },
      "contactPoint": {
        "name": "Paul Pester",
        "email": "paul.pester@lshtm.ac.uk",
        "telephone": "+44 02079272471"
      }
    },
    {
      "id": "GB-FTS-76291",
      "name": "ISN Products (Nig.) Ltd",
      "roles": [
        "supplier"
      ],
      "address": {
        "region": "NG",
        "locality": "Ilupeju, Lagos",
        "countryName": "Nigeria",
        "streetAddress": "40-42 Association Avenue"
      },
      "details": {
        "url": "http://www.isnmedical.com",
        "scale": "sme"
      },
      "identifier": {
        "legalName": "ISN Products (Nig.) Ltd"
      },
      "contactPoint": {
        "email": "contact@isnmedical.com"
      }
    },
    {
      "id": "GB-FTS-4330",
      "name": "The Royal Courts of Justice",
      "roles": [
        "reviewBody"
      ],
      "address": {
        "locality": "London",
        "postalCode": "WC2A 2LL",
        "countryName": "United Kingdom",
        "streetAddress": "The Strand"
      },
      "identifier": {
        "legalName": "The Royal Courts of Justice"
      }
    },
    {
      "id": "GB-FTS-3611",
      "name": "London School of Hygiene & Tropical Medicine",
      "roles": [
        "reviewContactPoint"
      ],
      "address": {
        "locality": "London",
        "postalCode": "WC1E 7HT",
        "countryName": "United Kingdom",
        "streetAddress": "Keppel Street"
      },
      "identifier": {
        "legalName": "London School of Hygiene & Tropical Medicine"
      },
      "contactPoint": {
        "email": "procurement@lshtm.ac.uk"
      }
    }
  ],
  "language": "en",
  "contracts": [
    {
      "id": "005792-2023-1",
      "value": {
        "amount": 917617.12,
        "currency": "USD"
      },
      "status": "active",
      "awardID": "005792-2023-1",
      "dateSigned": "2023-02-28T00:00:00Z"
    }
  ],
  "initiationType": "tender"
}